Stats

Staphylococcus aureus subsp. aureus USA300_FPR3757 GenBank RefSeq features
Feature type Count Count % Length (bp, total) Length %
[Genome] 2,872,769 100.00
Genes 2,648 100.00 2,408,457 83.84
CDS genes 2,560 96.68 2,359,416 82.13
rRNA genes 16 0.60 23,080 0.80
tRNA genes 53 2.00 4,099 0.14
Pseudogenes 18 0.68 21,503 0.75
Other genes [1] 1 0.04 359 0.01
Intergenic n.a. n.a. 464,312 16.16
Non-gene features [2] 7 n.a. 224,465 7.81

[1] ssrA (SAUSA300_0766) → 10Sa RNA (tmRNA)
[2] SCCmecIV, ACME, vSAalpha, SaPI5, PhiSA2USA, vSAbeta, and PhiSA3USA
n.a., not applicable

Summary results for BEI Tn-insertion mutants

Transposon insertions between and within genes
Description Count Percent
Insertions, all 1,952 100
Insertions between genes 0 0
Insertions affecting >= 1 gene (CDS, rRNA, tRNA, pseudogene, or "other gene") 1,956 100
Insertions affecting 2 genes (CDS, rRNA, tRNA, pseudogene, or "other gene") 4 n.a.
Insertions affecting > 2 genes (CDS, rRNA, tRNA, pseudogene, or "other gene") 0 0


Transposon insertions within CDS genes
Description Count Percent
Insertions, all 1,952 100
Insertions within the first third of gene length 1,336 68
Insertions within the middle third of gene length 472 24
Insertions within the last third of gene length 146 7
Distinct CDS genes 2,560 100
Distinct CDS with zero insertions 615 24
Distinct CDS with >= 1 insertions 1,945 76
Distinct CDS with >= 1 insertions within the first third of gene length 1,332
Distinct CDS with >= 1 insertions within the middle third of gene length 472
Distinct CDS with >= 1 insertions within the last third of gene length 146


Transposon insertions within rRNA genes
Description Count Percent
Insertions, all 2 n.a.
Distinct rRNA genes 16 100
Distinct rRNA with zero insertions 14 88
Distinct rRNA with >= 1 insertions 2 13


Transposon insertions within tRNA genes
Description Count Percent
Insertions 0 n.a.
Distinct tRNA genes 53 100
Distinct tRNA with zero insertions 53 100
Distinct tRNA with >= 1 insertions 0 0


Transposon insertions within pseudogenes
Description Count Percent
Insertions 0 n.a.
Distinct pseudogenes 18 100
Distinct pseudogenes with zero insertions 18 100
Distinct pseudogenes with >= 1 insertions 0 0


Transposon insertions within "other genes"
Description Count Percent
Insertions 0 n.a.
Distinct "other genes" 1 100
Distinct "other genes" with zero insertions 1 100
Distinct "other genes" with >= 1 insertions 0 0


Transposon insertions within "non-gene features (NGF)"
Description Count Percent
Insertions 205 n.a.
Distinct "non-gene features" 7 100
Distinct "non-gene features" with zero insertions 0 0
Distinct "non-gene features" with >= 1 insertions 7 100